Bioinformatics Toolbox™

seqtool - Open tool to interactively explore biological sequences

Syntax

seqtool(Seq)

seqtool(..., 'PropertyName', PropertyValue,...)
seqtool(..., 'Alphabet', AlphabetValue)

Arguments

Description

seqtool(Seq) loads a sequence (Seq) into the seqtool GUI.

seqtool(..., 'PropertyName', PropertyValue,...) defines optional properties using property name/value pairs.

seqtool(..., 'Alphabet', AlphabetValue) specifies an alphabet (AlphabetValue) for the sequence (Seq). Default is 'AA', except when all of the symbols in the sequence are A, C, G, T, and -, then AlphabetValue is set to 'NT'. Use 'AA' when you want to force an amino acid sequence alphabet.

Example

1. Get a sequence from Genbank.

   S = getgenbank('M10051')

2. Open the sequence tool window with the sequence.

   seqtool(S)

   

See Also

Bioinformatics Toolbox functions: aa2nt, aacount, aminolookup, basecount, baselookup, dimercount, emblread, fastaread, fastawrite, genbankread, geneticcode, genpeptread, getembl, getgenbank, getgenpept, nt2aa, proteinplot, seqcomplement, seqdisp, seqrcomplement, seqreverse, seqshoworfs, seqshowwords, seqwordcount

seqshowwords

seqwordcount